Multivariate analyses of codon usage biases /

A complete case study with all coding sequences from the bacteria Borrellia burgdorferi illustrates how multivariate analyses reveals evolutionary mechanisms acting at the molecular level. They are either mutationnal (symmetric and asymmetric directionnal mutation pressure) or selective (selection a...

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Detalles Bibliográficos
Clasificación:Libro Electrónico
Autor principal: Lobry, Jean R. (Autor)
Formato: Electrónico eBook
Idioma:Inglés
Publicado: London, UK : Kidlington, Oxford, UK : ISTE Press Ltd ; Elsevier Ltd, 2018.
Colección:Statistics for bioinformatics set.
Temas:
Molecular evolution.
Gene expression.
Genomics.
Evolution, Molecular
Gene Expression
Genomics
�Evolution mol�eculaire.
Expression g�enique.
G�enomique.
SCIENCE > Life Sciences > Biochemistry.
Gene expression
Molecular evolution
Acceso en línea:Texto completo
Tabla de Contenidos:
  • Front Cover; Multivariate Analyses of Codon Usage Biases; Copyright; Contents; Acknowledgments; Introduction; Chapter 1. Introduction to Correspondence Analysis; 1.1. Chapter objectives; 1.2. Metric choice; 1.3. Properties; Chapter 2. Global Correspondence Analysis; 2.1. Data set; 2.2. Running global correspondence analysis; 2.3. The missing factor F0; 2.4. First factor; 2.5. Second and third factors; 2.6. Fourth and fifth factors; Chapter 3. Within and Between Correspondence Analysis; 3.1. Running the analyses; 3.2. Synonymous codon usage (WCA); 3.3. Amino acid usage (BCA)
  • Chapter 4. Internal Correspondence Analysis4.1. Running the analyses; 4.2. Synonymous codon usage; 4.3. Non-synonymous codon usage; Conclusion; Appendices; Appendix 1; A1.1. Introduction; A1.2. Chapter 1; A1.3. Chapter 2; A1.4. Chapter 3; A1.5. Chapter 4; Appendix 2; A2.1. Session information; References; Index; Back Cover

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