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Microbiomics : dimensions, applications, and translational implications of human and environmental microbiome research /
| Clasificación: | Libro Electrónico |
|---|---|
| Otros Autores: | , |
| Formato: | Electrónico eBook |
| Idioma: | Inglés |
| Publicado: |
London :
Academic Press,
2020.
|
| Colección: | Translational and applied genomics series.
|
| Temas: | |
| Acceso en línea: | Texto completo |
Tabla de Contenidos:
- Front Cover
- Microbiomics
- Copyright Page
- Contents
- List of Contributors
- 1 Introduction: The Microbiome as a Concept: Vogue or Necessity?
- References
- I. Classes and Kinds of Microbiomes
- 2 Bacteriome and Archaeome: The Core Family Under the Microbiomic Roof
- Introduction
- DNA Exchange
- The Pioneers, Their Vision and Their Means
- Diversity
- Habitats, Settings, and Formats
- Environmental Adaptability, Monitoring, and Engineering
- The (Near-Term) Way Ahead
- References
- 3 Myc(et)obiome: The Big Uncle in the Family
- Introduction
- Emergence and Establishment
- Definition and Identity
- Mycobiome: Status, Categories, and Essence
- Mycobiome: Structure and Composition
- Studying the Mycobiome
- Microscopy
- Culture and Culturomics
- Immunoassays
- Metagenomics
- Select Mycobiomic Research: Some Working Examples
- Human Mycobiomes
- Remote Effects, Communication, and Control Functions of Mycobiomes
- Gut-Brain Axis and the Mycobiome Factor
- Mycorrhizal Databuses
- References
- 4 Virome: The Prodigious Little Cousin of the Family
- Introduction
- The Viral Components of the Microbiome
- The Environmental Virome
- The Plant Virome
- The Human Virome
- Methodological Challenges Associated With Virome Studies
- The Host-Virus Interactome
- Network Analysis: A Roadmap to Explore Host-Virus Interactions
- Prospecting the Continuum of Interactions Within the Virosphere
- The Double-Stranded DNA Virus-Host Interactome
- Humans, Apes, and Monkeys
- Dolphins
- Bats
- Birds
- Amoebas
- Fishes
- Bacteria
- Future Perspectives, Aspects, and Prospects
- References
- II. The Study of Microbiota and Microbiomes
- 5 Identifying Microbiota: Genomic, Mass-Spectrometric, and Serodiagnostic Approaches
- Introduction-The Romantic Past
- The Modern Pedigree
- Metamodernism: The Changing Environment
- Metamodernism: The Methods
- Mass Spectrometry
- Immunoassays
- Genomics
- Microscopy
- Conclusion: A Peek of the Future
- References
- 6 Panmicrobial Microarrays
- Introduction
- Invention, Definition, and Rationale of Microarrays
- Pedigree and Categories of Microarrays
- Comparison to the State of the Art
- Trade-Offs and Prospects
- Methodology
- Development and Optimization
- Types of Labeling Signal
- Amplification
- The Microbiomic Aspect of Microarray Concepts
- The Genomic Aspect
- Phenotypic Microarrays
- Live Cell Microarrays
- Conclusion
- References
- 7 Metagenomics in Microbiomic Studies
- Introduction
- Commensals and Infectious Agents
- Five Key Metrics
- Sensitivity
- Efficiency
- Bias/Universality
- Taxonomic Classification of Novel Microbes
- Contamination
- Total DNA or RNA Sequencing Using Illumina
- Specimen Collection and Storage
- DNA/RNA Extraction
- Isolation of Relevant DNA/RNA
- Library Preparation
- Sequencing
- Alignment
- Tabulation
- Ribosomal RNA Genes rrs and rrl
- Conserved Sequences