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Bioinformatics with Python cookbook : learn how to use modern Python bioinformatics libraries and applications to do cutting-edge research in computational biology /
If you have intermediate-level knowledge of Python and are well aware of the main research and vocabulary in your bioinformatics topic of interest, this book will help you develop your knowledge further.
| Clasificación: | Libro Electrónico |
|---|---|
| Autor principal: | |
| Formato: | Electrónico eBook |
| Idioma: | Inglés |
| Publicado: |
Birmingham, England ; Mumbai [India] :
Packt Publishing,
2015.
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| Colección: | Community experience distilled.
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| Temas: | |
| Acceso en línea: | Texto completo |
MARC
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|---|---|---|---|
| 001 | EBSCO_ocn921507409 | ||
| 003 | OCoLC | ||
| 005 | 20231017213018.0 | ||
| 006 | m o d | ||
| 007 | cr |n||||||||| | ||
| 008 | 150710t20152015enka o 001 0 eng d | ||
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| 019 | |a 966181134 |a 966472554 | ||
| 020 | |a 9781783558650 |q (electronic bk.) | ||
| 020 | |a 1783558652 |q (electronic bk.) | ||
| 020 | |z 9781782175117 | ||
| 020 | |z 1782175113 | ||
| 035 | |a (OCoLC)921507409 |z (OCoLC)966181134 |z (OCoLC)966472554 | ||
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| 082 | 0 | 4 | |a 005.133 |2 23 |
| 049 | |a UAMI | ||
| 100 | 1 | |a Antao, Tiago, |e author. | |
| 245 | 1 | 0 | |a Bioinformatics with Python cookbook : |b learn how to use modern Python bioinformatics libraries and applications to do cutting-edge research in computational biology / |c Tiago Antao. |
| 264 | 1 | |a Birmingham, England ; |a Mumbai [India] : |b Packt Publishing, |c 2015. | |
| 264 | 4 | |c ©2015 | |
| 300 | |a 1 online resource (x, 286 pages) | ||
| 336 | |a text |b txt |2 rdacontent | ||
| 337 | |a computer |b c |2 rdamedia | ||
| 338 | |a online resource |b cr |2 rdacarrier | ||
| 490 | 1 | |a Community Experience Distilled | |
| 500 | |a Includes index. | ||
| 500 | |a "Quick answers to common problems"--Cover | ||
| 588 | 0 | |a Online resource; title from PDF title page (ebrary, viewed July 11, 2015). | |
| 505 | 0 | |a Cover; Copyright; Credits; About the Author; About the Reviewers; www.PacktPub.com; Table of Contents; Preface; Chapter 1: Python and the Surrounding Software Ecology; Introduction; Installing the required software with Anaconda; Installing the required software with Docker; Interfacing with R via rpy2; Performing R magic with IPython; Chapter 2: Next-generation Sequencing; Introduction; Accessing GenBank and moving around NCBI databases; Performing basic sequence analysis; Working with modern sequence formats; Working with alignment data; Analyzing data in variant call format | |
| 505 | 8 | |a Studying genome accessibility and filtering SNP dataChapter 3: Working with Genomes; Introduction; Working with high-quality reference genomes; Dealing with low-quality genome references; Traversing genome annotations; Extracting genes from a reference using annotations; Finding orthologues with the Ensembl REST API; Retrieving gene ontology information from Ensembl; Chapter 4: Population Genetics; Introduction; Managing datasets with PLINK; Introducing the Genepop format; Exploring a dataset with Bio. PopGen; Computing F-statistics; Performing Principal Components Analysis | |
| 505 | 8 | |a Investigating population structure with AdmixtureChapter 5: Population Genetics Simulation; Introduction; Introducing forward-time simulations; Simulating selection; Simulating population structure using island and stepping-stone models; Modeling complex demographic scenarios; Simulating the coalescent with Biopython and fastsimcoal; Chapter 6: Phylogenetics; Introduction; Preparing the Ebola dataset; Aligning genetic and genomic data; Comparing sequences; Reconstructing phylogenetic trees; Playing recursively with trees; Visualizing phylogenetic data; Chapter 7: Using the Protein Data Bank | |
| 505 | 8 | |a IntroductionFinding a protein in multiple databases; Introducing Bio. PDB; Extracting more information from a PDB file; Computing molecular distances on a PDB file; Performing geometric operations; Implementing a basic PDB parser; Animating with PyMol; Parsing mmCIF files using Biopython; Chapter 8: Other Topics in Bioinformatics; Introduction; Accessing the Global Biodiversity Information Facility; Geo-referencing GBIF datasets; Accessing molecular-interaction databases with PSIQUIC; Plotting protein interactions with Cytoscape the hard way; Chapter 9: Python for Big Genomics Datasets | |
| 505 | 8 | |a IntroductionSetting the stage for high-performance computing; Designing a poor human concurrent executor; Performing parallel computing with IPython; Computing the median in a large dataset; Optimizing code with Cython and Numba; Programming with laziness; Thinking with generators; Index | |
| 520 | |a If you have intermediate-level knowledge of Python and are well aware of the main research and vocabulary in your bioinformatics topic of interest, this book will help you develop your knowledge further. | ||
| 590 | |a eBooks on EBSCOhost |b EBSCO eBook Subscription Academic Collection - Worldwide | ||
| 650 | 0 | |a Python (Computer program language) | |
| 650 | 0 | |a Bioinformatics. | |
| 650 | 0 | |a Computational biology. | |
| 650 | 6 | |a Python (Langage de programmation) | |
| 650 | 6 | |a Bio-informatique. | |
| 650 | 7 | |a COMPUTERS |x Programming Languages |x General. |2 bisacsh | |
| 650 | 7 | |a Computational biology. |2 fast |0 (OCoLC)fst00871990 | |
| 650 | 7 | |a Bioinformatics. |2 fast |0 (OCoLC)fst00832181 | |
| 650 | 7 | |a Python (Computer program language) |2 fast |0 (OCoLC)fst01084736 | |
| 776 | 0 | 8 | |i Print version: |a Antao, Tiago. |t Bioinformatics with Python cookbook : learn how to use modern Python bioinformatics libraries and applications to do cutting-edge research in computational biology. |d Birmingham, England ; Mumbai, [India] : Packt Publishing, ©2015 |h x, 286 pages |k Community experience distilled. |z 9781782175117 |
| 830 | 0 | |a Community experience distilled. | |
| 856 | 4 | 0 | |u https://ebsco.uam.elogim.com/login.aspx?direct=true&scope=site&db=nlebk&AN=1018253 |z Texto completo |
| 938 | |a EBSCOhost |b EBSC |n 1018253 | ||
| 938 | |a YBP Library Services |b YANK |n 12503071 | ||
| 994 | |a 92 |b IZTAP | ||