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Image processing with ImageJ : discover the incredible possibilities of ImageJ, from basic image procesing to macro and plugin development /
Annotation
| Clasificación: | Libro Electrónico |
|---|---|
| Autor principal: | |
| Otros Autores: | |
| Formato: | Electrónico eBook |
| Idioma: | Inglés |
| Publicado: |
Birmingham :
Packt Publishing,
2013.
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| Colección: | Community experience distilled.
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| Temas: | |
| Acceso en línea: | Texto completo |
Tabla de Contenidos:
- ""Cover ""; ""Copyright""; ""Credits""; ""About the Authors""; ""About the Reviewers""; ""www.PacktPub.com""; ""Table of Contents""; ""Preface""; ""Chapter 1: Getting Started with ImageJ ""; ""ImageJ � history and motivation""; ""What ImageJ is for (and what it is not for)""; ""Installing ImageJ""; ""Windows""; ""Linux / Mac OS""; ""First run""; ""Updating the installation""; ""Configuration options""; ""Memory limit increase""; ""Summary""; ""Chapter 2 : Basic Image Processing with ImageJ""; ""Image reading/writing""; ""Opening images with a certain format""; ""Reading raw data""
- ""Online sample images""""Saving images""; ""Zooming on the image, pixel values""; ""Color and multichannel images""; ""3D and 4D images � stacks and hyperstacks""; ""Image adjust tools""; ""Image histogram and window/level parameters""; ""Thresholding""; ""Image resizing""; ""Summary""; ""Chapter 3 : Advanced Image Processing with ImageJ""; ""Selecting regions of your image""; ""Basic selections � lines, length, and profiles""; ""Drawing regions of interest over an area""; ""ROI manager and the image overlay""; ""Filters""; ""Image filtering in the spatial domain""; ""Edge detection""
- ""The Fourier transform""""Image filtering in the frequency domain""; ""Particle analysis""; ""Summary""; ""Chapter 4 : ImageJ Macros""; ""What is an ImageJ macro""; ""The macro recorder""; ""Running macros""; ""Modifying a recorded macro""; ""More about the macro language � basic syntax and operators""; ""Variables""; ""A brief note on debugging a macro""; ""Control structures""; ""The for loop""; ""The while loop""; ""The if (condition) and if (condition) � else statements""; ""Defining functions""; ""Some useful procedures""; ""Opening an image from a macro""
- ""Finding out how many images are open""""Obtaining the dimensions of an image""; ""A note on slices, frames, and channels""; ""Selecting a specific image""; ""Speeding up a macro""; ""Adding a GUI to your macro""; ""The batch mode""; ""Installing macros for easy access""; ""Shared macros � the ImageJ macro directory""; ""Summary""; ""Chapter 5 : ImageJ Plugins for Users""; ""ImageJ plugins""; ""Installing a plugin""; ""Some useful plugins""; ""LOCI Bio-Formats""; ""Image segmentation""; ""Auto Threshold and Auto Local threshold""; ""The trainable Weka segmentation""
- SIOX (Simple Interactive Object Extraction)Clustering
- Image registration
- Stackreg
- 3D volume rendering
- Volume Viewer
- Other utilities
- MosaicJ
- FigureJ
- Study anonymization
- FIJI (Fiji Is Not ImageJ)
- Summary
- Chapter 6 : ImageJ Plugins for Developers
- A sample plugin
- The PlugInFilter interface
- Adding a GUI to your plugin
- The ImageJ plugin API
- Setting up ImageJ under the Eclipse IDE
- Our first Eclipse ImageJ plugin
- Sharing your plugin
- Using external libraries
- Summary
- Index