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Advances in bioinformatics and its applications : proceedings of the International Conference : Nova Southeastern University, Fort Lauderdale, Florida, USA, 16-19 December 2004 /
This unique volume presents major developments and trends in bioinformatics and its applications. Comprising high-quality scientific research papers and state-of-the-art survey articles, the book has been divided into five main sections : Microarray Analysis and Regulatory Networks; Machine Learning...
| Clasificación: | Libro Electrónico |
|---|---|
| Autores Corporativos: | , |
| Otros Autores: | , , |
| Formato: | Electrónico Congresos, conferencias eBook |
| Idioma: | Inglés |
| Publicado: |
Singapore ; Hackensack, N.J. :
World Scientific Pub. Co.,
©2005.
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| Colección: | Series in mathematical biology and medicine ;
v. 8. |
| Temas: | |
| Acceso en línea: | Texto completo |
Tabla de Contenidos:
- 1. Microarray analysis and regulatory networks. Microarray normalization using proportional abundance / S.A. Eschrich and C.A. Beam. Emerging pattern based subspace clustering of microarray gene expression data using mixture models / Y.B. Kim, J.H. Oh and J. Gao. Thermodynamic feasibility of metabolic networks / R. Nigam and S. Liang. Computational reconstruction of the carbon fixation pathway in Synechococcus sp. WH8102 / P. Dam [and others]. Modular neural networks and their application in exon prediction / Y. Pan and C.W. Sensen. Gene definition in different databases and its implication in microarray data interpretation / P. Wang [and others]. Exploring important issues in the implementation of gene set enrichment analysis / Y. Wang, S.J. Watson and F. Meng. Querying a database of regulatory elements / C. Yang [and others]
- 2. Machine learning and statistical analyses. Computational epidemiology : Bayesian disease surveillance / K. Abbas [and others]. Non-equilibrium fluctuations in a stochastic planktonic model : periodicity of phytoplankton bloom / R. Bhattacharyya and B. Mukhopadhyay. Fuzzy decoding in profile hidden Markov models for protein family identification / N.P. Bidargaddi, M. Chetty and J. Kamruzzaman. Screening potential Allele-frequency disequilibrium in data from affymetrix gene expression arrays / M. Dai [and others]. The application of self organizing maps for the analyses of DNA sequences / H. Dozono [and others]. Gaussian kernel width generation for support vector clustering / S.-H. Lee and K. Daniels. Serum proteomic pattern analysis for early cancer detection / Y. Liu. A linear solution for haplotype perfect phylogeny problem (extended abstract) / Y. Liu and C.-Q. Zhang. In Silico biology : haplotype inference, linkage disequilibrium analysis, and microarray-based gene selection techniques / T. Niu. The role of feature redundancy in tumor classification / C.H. Ooi, M. Chetty and I. Gondal. Clustering of eukaryotic orthologs based on sequence and domain similiarities using the Markov graph-flow algorithm / H. Ozer [and others]. Rapid drug target identification in microbial genomes
- an in silico approach with special reference to salmonella species / K.R. Sakharkar [and others]. A collimator neural network model for the classification of genetic data / M.S.B. Sehgal, I. Gondal and L. Dooley. Training set design for pattern discovery with applications to protein motif detection / Y. Sun [and others]. Gene selection by weighted Fisher criterion for multiclass prediction / J. Xuan [and others]. Sequential bifurcation approach to learning protein functional classes / M.Q. Yang, O.K. Ersoy and J.Y. Yang. Identification of contaminants in MALDI-TOF proteomics spectra via data mining / C.-Y. Yen, K.J. Cios and M.W. Duncan. Analysis of the effects of recombinant human Erythropoietin (EPO) on murine bone marrow populations using mixture modeling techniques / G. Zheng [and others]. Discovery of local protein sequence motifs using improved K-means clustering technique / W. Zhong [and others]
- 3. Biomolecular sequence and structure analysis. Predicting and characterizing metal-binding sites using support vector machines / L. Bobadilla, F. Niäno and G. Narasimhan. MTMM
- a Matlab toolbox for macromolecular modeling / F. Cui, T. Bibi and Z. Wu. Stabbing balls and simplifying proteins / O. Daescu and J. Luo. Step-wise mutations of mRNA sequences lead to progressive changes in calculated folding free energies / D. Digby and W. Seffens. Aligning sequences with non-fffine gap penalty : plains algorithm, a practical implementation, and its biological applications in comparative genomics / O. Gill, Y. Zhou and B. Mishra. Using the length constraints of helix to evaluate protein secondary structure prediction for helix / J. He and Y. Lu. An algorithm for finding similarities in protein active sites / K. Kupas, A. Ultsch and G. Klebe. Parallel tempering in Rosetta practice / Y. Li, C.E.M. Strauss and A. Gorin. An application of association rule mining to HLA-A*0201 epitope prediction / T. Milledge, G. Zheng and G. Narasimhan. A two-way searching algorithm for de novo peptide sequencing via tandem mass spectrometry / J.H. Oh, Y.B. Kim and J. Gao. An algorithm for determining Giycan structures from MS/MS spectra / B. Shan [and others]. Counting and enumeration of self-assembly pathways for symmetric macromolecular structures / M. Sitharam and M. Bâona. Improving multiple whole genomes alignment by considering rearrangement / J. Yang and J.S. Deogun. A filtering approach to splice site predictions in human genes / K. Yoon and S. Kwek. The construction of structural templates for the modeling of conserved protein domains / F. Zhang [and others]
- 4. Symmetry in sequences. Applications of hyper genetic code to bioinformatics / M.A. Jimenez-Montaäno. A Dodecahedron-based model of spatial representation of the canonical set of amino acids / V.A. Karasev, V.V. Luchinin and V.E. Stefanov. Molecular mappings : group theory, coding theory, and the emergence of replication / D.A. MacDâonaill. Symmetry and information in the genetic code / T. Negadi. The rules of degeneracy and segregations in genetic codes
- the chronocyclic conception and parallels with Mendel's laws / S.V. Petoukhov. Symbolic coding of amino acid and nucleotide properties / N. ùStambuk, P. Konjevoda and N. Gotovac. Analyzing patterns of tripeptides using statistical approach and neural network paradigms / R. Szabo [and others]. Molecular versus atomic information logic behind the genetic coding contents constrained by two evolutionary axes and the Fibonacci-Lucas sequence / C.M. Yang
- 5. Signal processing, image processing and visualization. Use of EEG recordings as valid measures of kinesthetic and visual imagery ability / J.G., Cremades [and others]. The merits of the third dimension for visual analysis of multiple anatomy ontologies / A.-S. Dadzie and A. Burger. Localization of brain activation through integration of optical topography and magnetic resonance imaging / M. Mourad, M. Adjouadi and I. Yaylali. A distributed multimedia database visualization within an immersive environment for bioinformatics / P.-E. Gros [and others].