Topology and geometry of biopolymers : AMS Special Session on Topology of Biopolymers, April 21-22, 2018, Northeastern University, Boston, Massachusetts /

This book contains the proceedings of the AMS Special Session on Topology of Biopolymers, held from April 21-22, 2018, at Northeastern University, Boston, MA. The papers cover recent results on the topology and geometry of DNA and protein knotting using techniques from knot theory, spatial graph the...

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Detalles Bibliográficos
Clasificación:Libro Electrónico
Autor Corporativo: AMS Special Session on Topology of Biopolymers Boston, Mass.
Otros Autores: Flapan, Erica, 1956- (Editor ), Wong, Helen, 1978- (Editor )
Formato: Electrónico Congresos, conferencias eBook
Idioma:Inglés
Publicado: Providence, Rhode Island : American Mathematical Society, [2020]
Colección:Contemporary mathematics (American Mathematical Society) ; v. 746.
Temas:
Biopolymers > Mathematics > Congresses.
Topology > Congresses.
Knot theory > Congresses.
Biopolymers.
Biopolymers
Biopolymères > Mathématiques > Congrès.
Topologie > Congrès.
Théorie des nœuds > Congrès.
Biopolymères.
Biología > Modelos matemáticos
Análisis numérico
Biopolymers > Mathematics
Knot theory
Topology
Manifolds and cell complexes {For complex manifolds, see 32Qxx} > Low-dimensional topology > Knots and links in $S3$ {For higher dimensions, see 57Q45.
Manifolds and cell complexes {For complex manifolds, see 32Qxx} > Low-dimensional topology > Invariants of knots and 3-manifolds.
Combinatorics {For finite fields, see 11Txx} > Graph theory {For applications of graphs, see 68R10, 81Q30, 81T15, 82B20, 82C20, 90C35, 92E10, 94C15} > Planar graphs; geometric and topological aspect.
Biology and other natural sciences > Physiological, cellular and medical topics > Biophysics.
Biology and other natural sciences > Physiological, cellular and medical topics > Biochemistry, molecular biology.
Biology and other natural sciences > Genetics and population dynamics > Protein sequences, DNA sequences.
Biology and other natural sciences > Chemistry {For biochemistry, see 92C40} > Molecular structure (graph-theoretic methods, methods of differential topology, etc.)
Statistical mechanics, structure of matter > Applications to specific types of physical systems > Polymers.
Statistical mechanics, structure of matter > Equilibrium statistical mechanics > Random walks, random surfaces, lattice animals, etc. [See also 60G50, 82C41].
Numerical analysis > Probabilistic methods, simulation and stochastic differential equations {For theoretical aspects, see 68U20 and 60H35} > Monte Carlo methods.
Conference papers and proceedings
Acceso en línea:Texto completo
Tabla de Contenidos:
  • Beyond the static DNA model of Watson and Crick / Jonathan M. Fogg and Lynn Zechiedrich
  • Characterizing the topology of kinoplast DNA using random knotting / Pengyu Liu, Ryan Polischuk, Yunan Diao, and Javier Arsuaga
  • Did sequence dependent geometry influence the evolution of the genetic code? / Alex Kasman and Brenton LeMesurier
  • Topological sum rules in the knotting probabilities of DNA / Tetsuo Deguchi and Erica Uehara
  • Knotting of replication intermediates is narrowly restricted / Dorothy Buck and Danielle O'Donnol
  • Recent advances on the non-coherent band surgery model for site-specific recombination / Allison H. Moore and Mariel Vazquez
  • Why are there knots in proteins? / Sophie Jackson
  • Knotted proteins : tie etiquette in structural biology / Ana Nunes and Patricia Faisca
  • Knotoids and protein structure / Dimoklis Gkountaroulis, Julien Dorier, and Andrzej Stasiak
  • Topological linking and entanglement in proteins / Kenneth C. Millett
  • A topological study of protein folding kinetics / Eleni Panagiotou and Kevin W. Plaxco.

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