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Image Processing with ImageJ /
The book will help readers discover the various facilities of ImageJ through a tutorial-based approach. This book is targeted at scientists, engineers, technicians, and managers, and anyone who wishes to master ImageJ for image viewing, processing, and analysis. If you are a developer, you will be a...
| Clasificación: | Libro Electrónico |
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| Autor principal: | |
| Otros Autores: | |
| Formato: | Electrónico eBook |
| Idioma: | Inglés |
| Publicado: |
Birmingham, UK :
Packt Publishing,
2013.
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| Temas: | |
| Acceso en línea: | Texto completo |
Tabla de Contenidos:
- Cover; Copyright; Credits; About the Authors; About the Reviewers; www.PacktPub.com; Table of Contents; Preface; Chapter 1: Getting Started with ImageJ; ImageJ
- history and motivation; What ImageJ is for (and what it is not for); Installing ImageJ; Windows; Linux / Mac OS; First run; Updating the installation; Configuration options; Memory limit increase; Summary; Chapter 2: Basic Image Processing with ImageJ; Image reading/writing; Opening images with a certain format; Reading raw data; Online sample images; Saving images; Zooming on the image, pixel values; Color and multichannel images.
- 3D and 4D images
- stacks and hyperstacksImage adjust tools; Image histogram and window/level parameters; Thresholding; Image resizing; Summary; Chapter 3: Advanced Image Processing with ImageJ; Selecting regions of your image; Basic selections
- lines, length, and profiles; Drawing regions of interest over an area; ROI manager and the image overlay; Filters; Image filtering in the spatial domain; Edge detection; The Fourier transform; Image filtering in the frequency domain; Particle analysis; Summary; Chapter 4 : ImageJ Macros; What is an ImageJ macro; The macro recorder; Running macros.
- Modifying a recorded macroMore about the macro language
- basic syntax and operators; Variables; A brief note on debugging a macro; Control structures; The for loop; The while loop; The if (condition) and if (condition) ... else statements; Defining functions; Some useful procedures; Opening an image from a macro; Finding out how many images are open; Obtaining the dimensions of an image; A note on slices, frames, and channels; Selecting a specific image; Speeding up a macro; Adding a GUI to your macro; The batch mode; Installing macros for easy access.
- Shared macros
- the ImageJ macro directorySummary; Chapter 5: ImageJ Plugins for Users; ImageJ plugins; Installing a plugin; Some useful plugins; LOCI Bio-Formats; Image segmentation; Auto Threshold and Auto Local threshold; The trainable Weka segmentation; SIOX (Simple Interactive Object Extraction); Clustering; Image registration; Stackreg; 3D volume rendering; Volume Viewer; Other utilities; MosaicJ; FigureJ; Study anonymization; FIJI (Fiji Is Not ImageJ); Summary; Chapter 6: ImageJ Plugins for Developers; A sample plugin; The PlugInFilter interface; Adding a GUI to your plugin.
- The ImageJ plugin APISetting up ImageJ under the Eclipse IDE; Our first Eclipse ImageJ plugin; Sharing your plugin; Using external libraries; Summary; Index.