Bioconductor Case Studies

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Bioconductor software has become a standard tool for the analysis and comprehension of data from high-throughput genomics experiments. Its application spans a broad field of technologies used in contemporary molecular biology. In this volume, the authors present a collection of cases to apply Biocon...

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Detalles Bibliográficos
Clasificación:Libro Electrónico
Autores principales: Hahne, Florian (Autor), Huber, Wolfgang (Autor), Gentleman, Robert (Autor), Falcon, Seth (Autor)
Autor Corporativo: SpringerLink (Online service)
Formato: Electrónico eBook
Idioma:Inglés
Publicado: New York, NY : Springer New York : Imprint: Springer, 2008.
Edición:1st ed. 2008.
Colección:Use R!,
Temas:
Life sciences.
Biometry.
Bioinformatics.
Biomathematics.
Life Sciences.
Biostatistics.
Computational and Systems Biology.
Mathematical and Computational Biology.
Acceso en línea:Texto Completo
Tabla de Contenidos:
  • The ALL Dataset
  • R and Bioconductor Introduction
  • Processing Affymetrix Expression Data
  • Two Color Arrays
  • Fold Changes, Log Ratios, Background Correction, Shrinkage Estimation, and Variance Stabilization
  • Easy Differential Expression
  • Differential Expression
  • Annotation and Metadata
  • Supervised Machine Learning
  • Unsupervised Machine Learning
  • Using Graphs for Interactome Data
  • Graph Layout
  • Gene Set Enrichment Analysis
  • Hypergeometric Testing Used for Gene Set Enrichment Analysis
  • Solutions to Exercises.

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